First thing to check before you waste alot of time, Does the motor zero. Send a goto zero command and check the motor to see if it's really on zero. If it's not you will need to do a zero reset.
Based on your response, I’m realizing I screwed up when I set the tuner up for the motor because when I have it go to zero it goes to my south satellite.
I originally set the dish up and aligned it without the motor. When I switched the tuner and dish over to use the motor, I think I accidentally zeroed my motor to my south satellite. I think the labels for moving the motor in this tuner are very confusing. The difference between my south satellite and true south is 1.6 degrees. This may account for the 97 channels coming in 95 in my tuner. The next nice evening I will go back up and start from scratch.